CLI and API reference
=====================

CLI reference
-------------

:code:`actinet`
...............

.. program-output:: actinet -h

:code:`accPlot`
...............

.. program-output:: accPlot -h

:code:`actinet-collate-outputs`
...............................

.. program-output:: actinet-collate-outputs -h 


API reference
-------------

.. autoclass:: actinet.models.ActivityClassifier
   :members:
   :undoc-members:

.. autoclass:: actinet.hmm.HMM
   :members:
   :undoc-members: